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Publications: Stony Brook X-ray Group and NSLS X-1A Beamline


We have below a list of publications from the Stony Brook X-ray Optics group, and also from other groups using the NSLS X1A beamline, starting from 1992 until now. Please send any corrections or additions to Chris.Jacobsen@stonybrook.edu.

For more recent publications please visit the NSLS publication search or go directly for beamline X1A1 or X1A2

First Author Refereed Journal Publications

2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 | 1995 | 1994 | 1993 | 1992 | 1991 | 1990 | 1989 | 1988 | 1987 | 1986 | 1985 | 1977 | 1974
    2008

  1. B. Hornberger, M. D. de Jonge, M. Feser, P. Holl, C. Holzner, C. Jacobsen, D. Legnini, D. Paterson, P. Rehak, L. Strüder and S. Vogt, "Differential Phase Contrast with a Segmented Detector in a Scanning X-Ray Microprobe," Journal of Synchrotron Radiation (in press), (2008).

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    2007

  2. B. Hornberger, M. Feser and C. Jacobsen, "Quantitative amplitude and phase contrast imaging in a scanning transmission X-ray microscope," Ultramicroscopy 107, 644-655, (2007). [Digital Object Identifier doi:10.1016/j.ultramic.2006.12.006] [PDF PDF]

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    2006

  3. M. Feser, B. Hornberger, C. Jacobsen, G. De Geronimo, P. Rehak, P. Holl and L. Strüder, "Integrating Silicon detector with segmentation for scanning transmission X-ray microscopy," Nuclear Instruments and Methods in Physics Research A 565, 841-854, (2006). [PDF PDF]

  4. M. Lu, D.M. Tennant and C.J. Jacobsen, "Orientation dependence of linewidth variation in sub-50-nm Gaussian e-beam lithography and its correction," Journal of Vacuum Science and Technology B 24 (6), 2881-2885, (2006). [PDF PDF]

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    2005

  5. M. Lerotic, C. Jacobsen, J.B. Gillow, A.J. Francis, S. Wirick, S. Vogt and J. Maser, "Cluster analysis in soft X-ray spectromicroscopy: finding the patterns in complex specimens," Journal of Electron Spectroscopy and Related Phenomena 144-147, 1137-1143, (2005). [PDF PDF]

  6. T. Beetz, M.R. Howells, C. Jacobsen, C.-C. Kao, J. Kirz, E. Lima, T.O. Mentes, H. Miao, C. Sanchez-Hanke, D. Sayre and D. Shapiro, "Apparatus for x-ray diffraction microscopy and tomography of cryo specimens," Nuclear Instruments and Methods in Physics Research A 545 (1-2), 459-468, (2005). [PDF PDF]

  7. D. Shapiro, P. Thibault, T. Beetz, V. Elser, M. Howells, C. Jacobsen, J. Kirz, E. Lima, H. Miao, A. M. Neiman and D. Sayre, "Biological imaging by soft x-ray diffraction microscopy," Proceedings of the National Academy of Science 102 (43), 15343-15346, (2005). [PDF PDF]

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    2004

  8. M. Lerotic, C. Jacobsen, T. Schäfer and S. Vogt, "Cluster analysis of soft x-ray spectromicroscopy data," Ultramicroscopy 100 (1-2), 35-57, (2004). [Digital Object Identifier doi:10.1016/j.ultramic.2004.01.008] [PDF PDF]

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    2003

  9. T. Beetz and C. Jacobsen, "Soft x-ray radiation-damage studies in PMMA using a cryo-STXM," Journal of Synchrotron Radiation 10 (3), 280-283, (2003). [PDF PDF]

  10. A. Stein, C. Jacobsen, K. Evans-Lutterodt, D.M. Tennant, G. Bogart, F. Klemens, L.E. Ocola, B.J. Choi and S.V. Sreenivasan, "Diffractive x-ray optics using production fabrication methods," Journal of Vacuum Science and Technology B 21 (1), 214-219, (2003). [PDF PDF]

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    2002

  11. K. Kaznacheyev, A. Osanna, C. Jacobsen, O. Plashkevych, O. Vahtras, H. Ågren, V. Carravetta and A. Hitchcock, "Innershell absorption spectroscopy of amino acids," Journal of Physical Chemistry A 106 (13), 3153-3168, (2002). [PDF PDF]

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    2001

  12. S. Vogt, H. N. Chapman, C. Jacobsen and R. Medenwaldt, "Dark field x-ray microscopy: the effects of condenser/detector aperture," Ultramicroscopy 87, 25-44, (2001). [PDF PDF]

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    2000

  13. J. Miao, J. Kirz and D. Sayre, "The oversampling phasing method," Acta Crystallographica D: Biological Crystallography 56, 1312-1315, (2000). [PDF PDF]

  14. B. Winn, H. Ade, C. Buckley, M. Feser, M. Howells, S. Hulbert, C. Jacobsen, K. Kaznacheyev, J. Kirz, A. Osanna, J. Maser, I. McNulty, J. Miao, T. Oversluizen, S. Spector, B. Sullivan, S. Wang, S. Wirick and H. Zhang, "Illumination for coherent soft x-ray applications: the new X1A beamline at the NSLS," Journal of Synchrotron Radiation 7, 395-404, (2000). [PDF PDF]

  15. C. Jacobsen, G. Flynn, S. Wirick and C. Zimba, "Soft x-ray spectroscopy from image sequences with sub-100 nm spatial resolution," Journal of Microscopy 197 (2), 173-184, (2000). [PDF PDF]

  16. J. Maser, A. Osanna, Y. Wang, C. Jacobsen, J. Kirz, S. Spector, B. Winn and D. Tennant, "Soft x-ray microscopy with a cryo STXM: I. Instrumentation, imaging, and spectroscopy," Journal of Microscopy 197 (1), 68-79, (2000). [PDF PDF]

  17. U. Neuhäusler, C. Jacobsen, D. Schulze, D. Stott and S. Abend, "A specimen chamber for soft x-ray spectromicroscopy on aqueous and liquid samples," Journal of Synchrotron Radiation 7, 110-112, (2000). [PDF PDF]

  18. Y. Wang, C. Jacobsen, J. Maser and A. Osanna, "Soft x-ray microscopy with a cryo STXM: II. Tomography," Journal of Microscopy 197 (1), 80-93, (2000). [PDF PDF]

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    1999

  19. H. N. Chapman, S. Vogt, C. Jacobsen, J. Kirz, J. Miao, Y. Wang, B. Winn and T. Oversluizen, "A shutter-photodiode combination for UV and soft x-ray beamlines," Journal of Synchrotron Radiation 6, 50, (1999).

  20. J. Miao, P. Charalambous, J. Kirz and D. Sayre, "An extension of the methods of x-ray crystallography to allow imaging of micron-size non-crystalline specimens," Nature 400, 342-344, (1999). [PDF PDF]

  21. U. Neuhäusler, S. Abend, G. Lagaly and C. Jacobsen, "Soft x-ray spectromicroscopy on solid stabilized emulsions," Colloid and Polymer Science 277, 719-726, (1999). [PDF PDF]

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    1998

  22. D. Sayre, H. N. Chapman and J. Miao, "On the extendibility of x-ray crystallography to noncrystals," Acta Crystallographica A 54, 232-239, (1998).

  23. C. Jacobsen and J. Kirz, "X-ray microscopy with synchrotron radiation," Nature Structural Biology 5 (supplement), 650-653, (1998). [PDF PDF]

  24. J. Miao, D. Sayre and H. N. Chapman, "Phase retrieval from the magnitude of the Fourier transforms of non-periodic objects," Journal of the Optical Society of America A 15 (6), 1662-1669, (1998). [PDF PDF]

  25. Y. Wang and C. Jacobsen, "A numerical study of resolution and contrast in soft x-ray contact microscopy," Journal of Microscopy 191 (2), 159-169, (1998). [PDF PDF]

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    1997

  26. J. Boese, A. Osanna, C. Jacobsen and J. Kirz, "Carbon edge XANES spectroscopy of amino acids and peptides," Journal of Electron Spectroscopy and Related Phenomena 85, 9-15, (1997). [PDF PDF]

  27. H.N. Chapman, "Phase-retrieval x-ray microscopy by Wigner-distribution deconvolution: signal processing," Scanning Microscopy 11, 67-80, (1997). [PDF PDF]

  28. S. Spector, C. Jacobsen and D. Tennant, "Process optimization for production of sub-20 nm soft x-ray zone plates," Journal of Vacuum Science and Technology B 15 (6), 2872-2876, (1997). [PDF PDF]

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    1996

  29. C. Jacobsen, H. N. Chapman, J. Fu, A. Kalinovsky, J. Kirz, J. Maser, A. Osanna, S. Spector, D. Tennant, S. Wang, S. Wirick and X. Zhang, "Biological Microscopy and Soft X-ray Optics at Stony Brook," Journal of Electron Spectroscopy and Related Phenomena 80, 337-341, (1996).

  30. H. N. Chapman, "Phase-retrieval x-ray microscopy by Wigner-distribution deconvolution," Ultramicroscopy 66, 153-172, (1996). [PDF PDF]

  31. X. Zhang, R. Balhorn, J. Mazrimas and J. Kirz, "Mapping and measuring DNA to protein ratios in mammalian sperm head by XANES imaging," Journal of Structural Biology 116, 335-344, (1996). [PDF PDF]

  32. H. N. Chapman, C. Jacobsen and S. Williams, "A characterisation of dark-field imaging of colloidal gold labels in a scanning transmission x-ray microscope," Ultramicroscopy 62 (3), 191-213, (1996). [PDF PDF]

  33. H. N. Chapman, J. Fu, C. Jacobsen and S. Williams, "Dark-field x-ray microscopy of immunogold-labeled cells," Journal of the Microscopy Society of America 2 (2), 53-62, (1996). [PDF PDF]

  34. B. Winn, H. Ade, C. Buckley, M. Howells, S. Hulbert, C. Jacobsen, J. Kirz, I. McNulty, J. Miao, T. Oversluizen, I. Pogorelsky and S. Wirick, "X1A: second generation undulator beamlines serving soft x-ray spectromicroscopy experiments at the NSLS," Reviews of Scientific Instruments 67 (9), 1-4, (1996), Paper A31.

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    1995

  35. D. Sayre and H. N. Chapman, "X-Ray Microscopy," Acta Crystallographica A 51, 237-252, (1995). [PDF PDF]

  36. S. Williams, C. Jacobsen, J. Kirz, J. Maser, S. Wirick, X. Zhang, H. Ade and M. Rivers, "Instrumentation developments in scanning soft x-ray microscopy at the NSLS," Review of Scientific Instruments 66 (2), 1271-1275, (1995).

  37. H. N. Chapman, C. Jacobsen and S. Williams, "Applications of a CCD detector in scanning transmission x-ray microscope," Review of Scientific Instruments 66 (2), 1332-1334, (1995). [PDF PDF]

  38. J. Kirz, C. Jacobsen and M. Howells, "Soft x-ray microscopes and their biological applications," Quarterly Reviews of Biophysics 28 (1), 33-130, (1995), Also available as Lawrence Berkeley Laboratory report LBL-36371. [PDF PDF]

  39. X. Zhang, C. Jacobsen, S. Lindaas and S. Williams, "Exposure strategies for PMMA from in situ XANES spectroscopy," Journal of Vacuum Science and Technology B 13 (4), 1477-1483, (1995). [PDF PDF]

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    1994

  40. J. Kirz, H. Ade, E. Anderson, C. Buckley, H. Chapman, M. Howells, C. Jacobsen, C.-H. Ko, S. Lindaas, D. Sayre, S. Williams, S. Wirick and X. Zhang, "New results in soft X-ray microscopy," Nuclear Instruments and Methods in Physics Research B 87, 92-97, (1994).

  41. X. Zhang, H. Ade, C. Jacobsen, J. Kirz, S. Lindaas, S. Williams and S. Wirick, "Micro-XANES: Chemical Contrast in the Scanning Transmission x-ray Microscope," Nuclear Instruments and Methods in Physics Research A 347, 431-435, (1994). [PDF PDF]

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    1993

  42. C. Jacobsen, S. Lindaas, S. Williams and X. Zhang, "Scanning luminescence x-ray microscopy: imaging fluorescence dyes at suboptical resolution," Journal of Microscopy 172, 121-129, (1993). [PDF PDF]

  43. S. Williams, X. Zhang, C. Jacobsen, J. Kirz, S. Lindaas, J. van't Hof and S. S. Lamm, "Measurements of Wet Metaphase Chromosomes in the Scanning Transmission X-ray Microscope," Journal of Microscopy 170, 155-165, (1993). [PDF PDF]

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    1992

  44. H. Ade, C.-H. Ko and E. Anderson, "Astigmatism correction in x-ray scanning photoemission microscope with use of elliptical zone plate," Applied Physics Letters 60, 1040-1042, (1992).

  45. H. Ade, C.-H. Ko, E. Johnson and E. Anderson, "Improved images with the scanning photoelectron microscope at the National Synchrotron Light Source," Surface Interface Analysis 19, 17-22, (1992).

  46. H. Ade, X. Zhang, S. Cameron, C. Costello, J. Kirz and S. Williams, "Chemical Contrast in X-ray Microscopy and Spatially Resolved XANES Spectroscopy of Organic Specimens," Science 258, 972-975, (1992). [PDF PDF]

  47. C. Jacobsen, J. Kirz and S. Williams, "Resolution in soft x-ray microscopes," Ultramicroscopy 47, 55-79, (1992). [PDF PDF]

  48. J. Kirz, H. Ade, C. Jacobsen, C.-H. Ko, S. Lindaas, I. McNulty, D. Sayre, S. Williams, X. Zhang and M. Howells, "Soft x-ray microscopy with coherent x-rays," Review of Scientific Instruments 63, 557-563, (1992). [PDF PDF]

  49. I. McNulty, J. Kirz, C. Jacobsen, E. Anderson, D. Kern and M. Howells, "High-resolution imaging by Fourier transform x-ray holography," Science 256, 1009-1012, (1992). [PDF PDF]

  50. C. Jacobsen and M. R. Howells, "A technique for projection x-ray lithography using computer generated holograms," Journal of Applied Physics 71 (6), 2993-3001, (1992). [PDF PDF]

  51. C. Jacobsen and M. Howells, "Projection x-ray lithography using computer-generated holograms: A study of compatibility with proximity lithography," Journal of Vacuum Science and Technology B 10 (6), 3177-3181, (1992). [PDF PDF]

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    1991

  52. H. Ade, J. Kirz, S. Hulbert, E. Johnson, E. Anderson and D. Kern, "Images of a microelectronic device with the X1-SPEM, a first generation scanning photoemission microscope at the National Synchrotron Light Source," Journal of Vacuum Science and Technology A 9, 1902-1906, (1991).

  53. C. Jacobsen, S. Williams, E. Anderson, M. T. Browne, C. J. Buckley, D. Kern, J. Kirz, M. Rivers and X. Zhang, "Diffraction-limited imaging in a scanning transmission x-ray microscope," Optics Communications 86, 351-364, (1991). [PDF PDF]

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    1990

  54. I. McNulty, J. Kirz, E. Anderson, M. R. Howells, C. Jacobsen and H. Rarback, "Soft X-ray Microscope using Fourier Transform Holography," Nuclear Instruments and Methods in Physics Research A 291, 74-79, (1990).

  55. H. Ade, J. Kirz, S. L. Hulbert, E. Johnson, E. Anderson and D. Kern, "X-ray spectromicroscopy with a zone plate generated microprobe," Applied Physics Letters 56, 1841-1843, (1990). [PDF PDF]

  56. C. Jacobsen, M. Howells, J. Kirz and S. Rothman, "X-ray holographic microscopy using photoresists," Journal of the Optical Society of America A 7, 1847-1861, (1990). [PDF PDF]

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    1989

  57. C. Buckley, H. Rarback, R. Alforque, D. Shu, H. Ade, S. Hellman, N. Iskander, J. Kirz, S. Lindaas, I. McNulty, M. Oversluizen, E. Tang, D. Attwood, R. DiGennaro, M. Howells, C. Jacobsen, Y. Vladimirsky, S. Rothman, D. Kern and D. Sayre, "Soft x-ray imaging with the 35 period undulator at the NSLS," Review of Scientific Instruments 60, 2444-2447, (1989).

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    1988

  58. H. Rarback, D. Shu, S. C. Feng, H. Ade, J. Kirz, I. McNulty, D. P. Kern, T. H. P. Chang, Y. Vladimirsky, N. Iskander, D. Attwood, K. McQuaid and S. Rothman, "Scanning x-ray microscope with 75-nm resolution," Review of Scientific Instruments 59, 52-59, (1988). [PDF PDF]

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    1987

  59. W. B. Yun and M. R. Howells, "High-resolution Fresnel zone plates for x-ray applications by spatial-frequency multiplication," Journal of the Optical Society of America 4, 34-40, (1987).

  60. C. Jacobsen, J. Kenney, J. Kirz, R. Rosser, F. Cinotti, H. Rarback and J. Pine, "Quantitative imaging and microanalysis with a scanning soft x-ray microscope," Physics in Medicine and Biology 32, 431-437, (1987).

  61. H. Rarback, F. Cinotti, C. Jacobsen, J. M. Kenney, J. Kirz and R. Rosser, "Elemental analysis using differential absorption techniques," Biological Trace Element Research 13, 103-113, (1987).

  62. W. B. Yun, J. Kirz and D. Sayre, "Observation of the soft X-ray diffraction pattern of a single diatom," Acta Crystallographica A 43, 131, (1987).

  63. B.-X. Yang, J. Kirz and S. Xu, "Characterization of phosphors in the soft x-ray region," Nuclear Instruments and Methods in Physics Research A 258, 141-145, (1987). [PDF PDF]

  64. B. X. Yang and J. Kirz, "Extended x-ray-absorption fine structure of liquid water," Physical Review B 36, 1361-1364, (1987). [PDF PDF]

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    1986

  65. C. Jacobsen, J. Kenney, J. Kirz, I. McNulty, R. Rosser, F. Cinotti, H. Rarback and D. Shu, "Soft x-ray scanning microscopy: its practical use for elemental mapping at the NSLS U15 beamline," Photochemistry and Photobiology 44, 421-423, (1986).

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    1985

  66. J. Kirz and H. Rarback, "Soft x-ray microscopes," Review of Scientific Instruments 56, 1-13, (1985). [PDF PDF]

  67. B. X. Yang, J. Kirz and T. K. Sham, "Oxygen K-edge absorption-spectra of O2, CO, and CO2," Physics Letters A 110 (6), 301-304, (1985).

  68. J. M. Kenney, C. Jacobsen, J. Kirz, H. Rarback, F. Cinotti, W. Thomlinson, R. Rosser and G. Schidlovsky, "Absorption microanalysis with a scanning soft X-ray microscope: mapping the distribution of calcium in bone," Journal of Microscopy 138 (3), 321-328, (June 1985). [PDF PDF]

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    1977

  69. D. Sayre, J. Kirz, R. Feder, D. M. Kim and E. Spiller, "Potential operating region for ultrasoft x-ray microscopy of biological specimens," Science 196, 1339-1340, (1977). [PDF PDF]

  70. D. Sayre, J. Kirz, R. Feder, D. M. Kim and E. Spiller, "Transmission Microscopy of Unmodified Biological Materials: Comparative Radiation Dosages with Electrons and Ultrasoft X-ray Photons," Ultramicroscopy 2, 337-341, (1977). [PDF PDF]

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    1974

  71. J. Kirz, "Phase zone plates for X rays and the extreme UV," Journal of the Optical Society of America 64, 301-309, (1974). [PDF PDF]

Collaborated Refereed Journal Publications

2008 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1996 | 1995 | 1992 | 1991 | 1990 | 1989 | 1988 | 1987 | 1986 | 1985 | 1976
    2008

  1. H. H. Harris, S. Vogt, H. Eastgate, D. Legnini, B. Hornberger, Z. Cai and P. A. Lay, "Migration of mercury from dental amalgam through human teeth," Journal of Synchrotron Radiation 15, 123-128, (2008). [PDF PDF]

  2. J. Lehmann, D. Solomon, J. Kinyangi, L. Dathe, S. Wirick and C. Jacobsen, "Spatial complexity of soil organic matter forms at nanometre scales," Nature Geoscience 1, (April 2008). [PDF PDF]

  3. M. D. de Jonge, B. Hornberger, D. Paterson, C. Holzner, D. Legnini, I. McNulty, C. Jacobsen and S. Vogt, "Quantitative phase imaging with a scanning transmission x-ray microscope," Physical Review Letters 100, 163902, (2008). [Digital Object Identifier doi:10.1103/PhysRevLett.100.163902] [PDF PDF]

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    2006

  4. M. Denecke, "Actinide Speciation using X-ray Spectroscopic Methods," Coordin. Chem. Rev. 250, 730-754, (2006).

  5. M. Schumacher, I. Christl, R. D. Vogt, K. Barmettler, C. Jacobsen and R. Kretschmar, "Chemical composition of aquatic dissolved organic matter in fiveboreal forest catchments sampled in spring and fall seasons," Biogeochemistry 80, 263-275, (2006).

  6. M. Anderson, T. Haraszti, G. Peterson, S. Wirick, C. Jacobsen, S. John and M. Grunze, "Scanning Tranmission X-ray Microscopic Analysis of Purifed Melanosomes of the Mouse Iris," Micron 37, 689-698, (2006). [PDF PDF]

  7. A. Braun, S. Wirick, A. Kubatova, B. Mun and F. Huggins, "Photochemically induced decarboxylation in diesel soot extracts," Atmospheric Environment 40, 5837-5844, (2006). [PDF PDF]

  8. P. Haberstroh, J. Brandes, Y. Gelinas, A. Dickens, S. Wirick and G. Cody, "Chemical Composition of the Graphitic Black Carbon Fraction in Riverine and Marine Sediments at Submicron Scales using Carbon X-ray Spectromicroscopy," Geochim. Cosmochim. Acta. 70, 1483-1494, (2006). [PDF PDF]

  9. J. Kinyangi, D. Solomon, B. Liang, M. Lerotic, S. Wirick and J. Lehmann, "Nanoscale Biogeocomplexity of the Organomineral Assemblage in Soil: Application of STXM and C 1s-NEXAFS Spectroscopy," Soil Science Society of America Journal 70, (Sep-Oct 2006). [PDF PDF]

  10. P. Thibault, V. Elser, C. Jacobsen, D. Shapiro and D. Sayre, "Reconstruction of a yeast cell from x-ray diffraction data," Acta Crystallographica A 62, 248-261, (2006). [PDF PDF]

  11. H.N. Chapman, A. Barty, S. Marchesini, A. Noy, S. P. Hau-Riege, C. Cui, M.R. Howells, R. Rosen, H. He, J.C.H. Spence, U. Weierstall, T. Beetz, C. Jacobsen and D. Shapiro, "High resolution ab initio three-dimensional x-ray diffraction microscopy," Journal of the Optical Society of America A 23, 1179-1200, (2006). [PDF PDF]

  12. M. Zolensky, T. Zega, H. Yano, S. Wirick, A. Westphal, M. Weisberg, I. Weber, J. Warren, M. Velbel, A. Tsuchiyama, P. Tsou, A. Toppani, N. Tomioka, N. Teslich, M. Taheri, J. Susini, R. Stroud, T. Stephan, F. Stadermann, C. Snead, S. Simon, A. Simionovici, T. See, F. Robert, F. Rietmeijer, W. Rao, M. Perronnet, D. Papanastassiou, K. Okudaira, K. Ohsumi, I. Ohnishi, K. Nakamura-Messenger, T. Nakamura, S. Mostefaoui, T. Mikouchi, A. Meibom, G. Matrajt, M. Marcus, H. Leroux, L. Lemelle, L. Le, A. Lanzirotti, F. Langenhorst, A. Krot, L. Keller, A. Kearsley, D. Joswiak, D. Jacob, H. Ishii, R. Harvey, K. Hagiya, L. Grossman, J. Grossman, G. Graham, M. Gounelle, P. Gillet, M. Genge, G. Flynn, T. Ferroir, S. Fallon, D. Ebel, Z. Dai, P. Cordier, B. Clark, M. Chi, A. Butterworth, D. Brownlee, J. Bridges, S. Brennan, A. Brearley, J. Bradley, P. Bleuet, P. Bland and R. Bastien, "Mineralogy and Petrology of Comet 81P/Wild 2 Nucleus Samples," Science 314 (5806), 1735-1739, (2006). [Digital Object Identifier doi:10.1126/science.1135842] [PDF PDF]

  13. D. Brownlee, P. Tsou, J. Aléon, C. Alexander, T. Araki, S. Bajt, G. Baratta, R. Bastien, P. Bland, P. Bleuet, J. Borg, J. Bradley, A. Brearley, F. Brenker, S. Brennan, J. Bridges, N. Browning, J. Brucato, E. Bullock, M. Burchell, H. Busemann, A. Butterworth, M. Chaussidon, A. Cheuvront, M. Chi, M. Cintala, B. Clark, S. Clemett, G. Cody, L. Colangeli, G. Cooper, P. Cordier, C. Daghlian, Z. Dai, L. D'Hendecourt, Z. Djouadi, G. Dominguez, T. Duxbury, J. Dworkin, D. Ebel, T. Economou, S. Fakra, S. Fairey, S. Fallon, G. Ferrini, T. Ferroir, H. Fleckenstein, C. Floss, G. Flynn, I. Franchi, M. Fries, Z. Gainsforth, J.-P. Gallien, M. Genge, M. Gilles, P. Gillet, J. Gilmour, D. Glavin, M. Gounelle, M. Grady, G. Graham, P. Grant, S. Green, F. Grossemy, L. Grossman, J. Grossman, Y. Guan, K. Hagiya, R. Harvey, P. Heck, G. Herzog, P. Hoppe, F. Hörz, J. Huth, I. Hutcheon, K. Ignatyev, H. Ishii, M. Ito, D. Jacob, C. Jacobsen, S. Jacobsen, S. Jones, D. Joswiak, A. Jurewicz, A. Kearsley, L. Keller, H. Khodja, D. Kilcoyne, J. Kissel, A. Krot, F. Langenhorst, A. Lanzirotti, L. Le, L. Leshin, J. Leitner, L. Lemelle, H. Leroux, M.-C. Liu, K. Luening, I. Lyon, G. MacPherson, M. Marcus, K. Marhas, B. Marty, G. Matrajt, K. McKeegan, A. Meibom, V. Mennella, K. Messenger, S. Messenger, T. Mikouchi, S. Mostefaoui, T. Nakamura, T. Nakano, M. Newville, L. Nittler, I. Ohnishi, K. Ohsumi, K. Okudaira, D. Papanastassiou, R. Palma, M. Palumbo, R. Pepin, D. Perkins, M. Perronnet, P. Pianetta, W. Rao, F. Rietmeijer, F. Robert, D. Rost, A. Rotundi, R. Ryan, S. Sandford, C. Schwandt, T. See, D. Schlutter, J. Sheffield-Parker, A. Simionovici, S. Simon, I. Sitnitsky, C. Snead, M. Spencer, F. Stadermann, A. Steele, T. Stephan, R. Stroud, J. Susini, S. Sutton, Y. Suzuki, M. Taheri, S. Taylor, N. Teslich, K. Tomeoka, N. Tomioka, A. Toppani, J. Trigo-Rodríguez, D. Troadec, A. Tsuchiyama, A. Tuzzolino, T. Tyliszczak, K. Uesugi, M. Velbel, J. Vellenga, E. Vicenzi, L. Vincze, J. Warren, I. Weber, M. Weisberg, A. Westphal, S. Wirick, D. Wooden, B. Wopenka, P. Wozniakiewicz, I. Wright, H. Yabuta, H. Yano, E. Young, N. Zare, T. Zega, K. Ziegler, L. Zimmerman, E. Zinner and M. Zolensky, "Comet 81P/Wild 2 Under a Microscope," Science 314 (5806), 1711-1716, (2006). [Digital Object Identifier doi:10.1126/science.1135840] [PDF PDF]

  14. S. Sandford, J. Aléon, C. Alexander, T. Araki, S. Bajt, G. Baratta, J. Borg, J. Bradley, D. Brownlee, J. Brucato, M. Burchell, H. Busemann, A. Butterworth, S. Clemett, G. Cody, L. Colangeli, G. Cooper, L. D'Hendecourt, Z. Djouadi, J. Dworkin, G. Ferrini, H. Fleckenstein, G. Flynn, I. Franchi, M. Fries, M. Gilles, D. Glavin, M. Gounelle, F. Grossemy, C. Jacobsen, L. Keller, D. Kilcoyne, J. Leitner, G. Matrajt, A. Meibom, V. Mennella, S. Mostefaoui, L. Nittler, M. Palumbo, D. Papanastassiou, F. Robert, A. Rotundi, C. Snead, M. Spencer, F. Stadermann, A. Steele, T. Stephan, P. Tsou, T. Tyliszczak, A. Westphal, S. Wirick, B. Wopenka, H. Yabuta, R. Zare and M. Zolensky, "Organics Captured from Comet 81P/Wild 2 by the Stardust Spacecraft," Science 314 (5806), 1720-1724, (2006). [Digital Object Identifier doi:10.1126/science.1135841] [PDF PDF]

    15. topbottom

    2005

  15. A. Braun, F.E. Huggins, N. Shah, Y. Chen, S. Wirick, S.B. Mun, C. Jacobsen and G.P. Huffman, "Advantages of soft X-ray absorption over TEM-EELS for solid carbon studies—a comparative study on diesel soot with EELS and NEXAFS," Carbon 43, 117-124, (2005). [PDF PDF]

  16. D.G. Mancosky, L.A. Lucia, H. Nanko, S. Wirick, A.W. Rudie and R. Braun, "Novel visualization studies of lignocellulosic oxidation chemistry by application of C-near edge X-ray absorption fine structure spectroscopy," Cellulose 12, 35-41, (2005). [PDF PDF]

  17. J. Lehmann, B. Liang, D. Solomon, M. Lerotic, F. Luizão, J. Kinyangi, T. Schäfer, S. Wirick and C. Jacobsen, "Near-edge X-ray absorption fine structure (NEXAFS) spectroscopy for mapping nanoscale distribution of organic carbon forms in soil: application to black carbon particles," Global Biogeochemical Cycles 19, 1013-1025, (2005). [PDF PDF]

  18. T. Schäfer, G. Buckau, R. Artinger, J.I. Kim, S. Geyer, M. Wolf, W.F. Bleam, S. Wirick and C. Jacobsen, "Origin and mobility of fulvic acids in the Gorleben aquifer system: implications from isotopic data and carbon/sulfur XANES," Organic Geochemistry 36, 567-582, (2005). [PDF PDF]

    19. topbottom

    2004

  19. G.J. Flynn, L.P. Keller, C. Jacobsen and S. Wirick, "An assessment of the amount and types of organic matter contributed to the Earth by interplanetary dust," Advances in Space Research 33, 57-66, (2004). [PDF PDF]

  20. J. A. Brandes, C. Lee, S. Wakeham, M. Peterson, C. Jacobsen, S. Wirick and G. Cody, "Examining marine particulate organic matter at sub-micron scales using scanning transmission X-ray microscopy and carbon X-ray absorption near edge structure spectroscopy," Marine Chemistry 92, 107-121, (2004). [PDF PDF]

  21. J. Miao, H. N. Chapman, J. Kirz, D. Sayre and K. O. Hodgson, "Taking x-ray diffraction to the limit: macromolecular structuresfrom femtosecond x-ray pulses and diffraction microscopy of cellswith synchrotron radiation," Annual Review of Biophysics and Biomolecular Structure 33, 157-176, (2004). [PDF PDF]

  22. A. Braun, N. Shah, F.E. Huggins, G.P. Huffman, S. Wirick, C. Jacobsen, K. Kelly and A.F. Sarofim, "A study of diesel PM with X-ray microspectroscopy," Fuel 83 (7-8), 997-1000, (2004). [PDF PDF]

  23. L. P. Keller, S. Messenger, G. J. Flynn, S. Clemett, S. Wirick and C. Jacobsen, "The nature of molecular cloud material in interplanetary dust," Geochimica et Cosmochimica Acta 68 (11), 2577-2589, (2004). [PDF PDF]

  24. C.K. Boyce, M.A. Zwieniecki, G.D. Cody, C. Jacobsen, S. Wirick, A.H. Knoll and N.M. Holbrook, "Evolution of xylem lignification and hydrogel transport regulation," Proceedings of the National Academy of Sciences 101 (50), 17555-17558, (2004). [PDF PDF]

    25. topbottom

    2003

  25. Y. Wang, W. Yun and C. Jacobsen, "Achromatic Fresnel optics for wideband extreme-ultraviolet and X-ray imaging," Nature 424, 50-53, (2003). [PDF PDF]

  26. K. Evans-Lutterodt, J.M. Ablett, A. Stein, C.-C. Kao, D.M. Tennant, F. Klemens, A. Taylor, C. Jacobsen, P.L. Gammel, H. Huggins, S. Ustin, G. Bogart and L. Ocola, "Single-element elliptical hard x-ray micro-optics," Optics Express 11 (8), 919-926, (2003). [PDF PDF]

  27. G.J. Flynn, L.P. Keller, M. Feser, S. Wirick and C. Jacobsen, "The origin of organic matter in the solar system: Evidence from the interplanetary dust particles," Geochimica et Cosmochimica Acta 67 (24), 4791-4806, (2003). [PDF PDF]

  28. B. S. Twining, S. B. Baines, N. S. Fisher, J. Maser, S. Vogt, C. Jacobsen, A. Tovar-Sanchez and S. A. Sañudo-Wilhelmy, "Quantifying trace elements in individual aquatic protist cells with a synchrotron x-ray fluorescence microprobe," Analytical Chemistry 75, 3806-3816, (2003). [PDF PDF]

    29. topbottom

    2002

  29. R. A. Bartels, A. Paul, H. Green, H. C. Kapteyn, M. M. Murnane, S. Backus, I. P. Christov, Y. Liu, D. Attwood and C. Jacobsen, "Generation of spatially coherent light at extreme ultraviolet wavelengths," Science 297 (5580), 376-378, (2002). [PDF PDF]

  30. C.K. Boyce, G.D. Cody, M. Feser, C. Jacobsen, A.H Knoll and S. Wirick, "Organic chemical differentiation within fossil plant cell walls detected with X-ray spectromicroscopy," Geology 30, 1039-1042, (2002). [PDF PDF]

    31. topbottom

    2001

  31. M.R. Howells, C.J. Jacobsen, S. Marchesini, S. Miller, J.C.H. Spence and U. Weirstall, "Toward a practical x-ray Fourier holography at high resolution," Nuclear Instruments and Methods in Physics Research A 467-468, 864-867, (2001).

    32. topbottom

    2000

  32. A. R. Kalukin, B. Winn, Y. Wang, C. Jacobsen, Z. H. Levine and J. Fu, "Calibration of high-resolution x-ray tomography with atomic force microscopy," Journal of Research of the National Institute of Standards and Technology 105 (6), 867-874, (2000).

    33. topbottom

    1996

  33. S. Lindaas, M. Howells, C. Jacobsen and A. Kalinovsky, "X-ray holographic microscopy by means of photoresist recording and atomic-force microscope readout," Journal of the Optical Society of America A 13 (9), 1788-1800, (1996). [PDF PDF]

    34. topbottom

    1995

  34. C.-H. Ko, J. Kirz, H. Ade, E. Johnson, S. Hulbert and E. Anderson, "Development of a second generation scanning photoemission microscope with a zone plate generated microprobe at the National Synchrotron Light Source," Review of Scientific Instruments 66 (2), 1416-1418, (1995).

    35. topbottom

    1992

  35. C. J. Buckley, G. F. Foster, R. E. Burge, S. Y. Ali, C. A. Scotchford, J. Kirz and M. L. Rivers, "Elemental imaging of cartilage by scanning x-ray microscopy," Review of Scientific Instruments 63, 588-590, (1992).

  36. B. W. Loo, Jr., S. Williams, S. Meizel and S. S. Rothman, "X-ray stereomicroscopy: high resolution 3-D imaging of human spermatozoa in aqueous suspension with natural contrast," Journal of Microscopy 166, RP5-RP6, (1992).

    37. topbottom

    1991

  37. D. M. Tennant, J. E. Gregus, C. Jacobsen and E. L. Raab, "Construction and test of phase zone plates for x-ray microscopy," Optics Letters 16, 621-623, (1991).

  38. M. R. Howells, J. Kirz and D. Sayre, "X-ray Microscopes," Scientific American 264 (2), 88-94, (feb 1991).

    39. topbottom

    1990

  39. H. Rarback, C. Buckley, K. Goncz, H. Ade, E. Anderson, D. Attwood, P. Batson, S. Hellman, C. Jacobsen, D. Kern, J. Kirz, S. Lindaas, I. McNulty, M. Oversluizen, M. Rivers, S. Rothman, D. Shu and E. Tang, "The scanning transmission microscope at the NSLS," Nuclear Instruments and Methods in Physics Research A 291, 54-59, (1990).

  40. H. Rarback, C. Buckley, H. Ade, F. Camilo, R. DiGennaro, S. Hellman, M. Howells, N. Iskander, C. Jacobsen, J. Kirz, S. Krinsky, S. Lindaas, I. McNulty, M. Oversluizen, S. Rothman, D. Sayre, M. Sharnoff and D. Shu , "Coherent Radiation for X-ray Imaging - The Soft X-Ray Undulator and the X1A Beamline at the NSLS," Journal of X-ray Science and Technology 2, 274-296, (1990).

    41. topbottom

    1989

  41. T. K. Sham, B. X. Yang, J. Kirz and J. S. Tse, "K-edge near-edge x-ray-absorption fine structure of oxygen- and carbon-containing molecules in the gas phase," Physical Review A 40, 652-669, (1989).

  42. S. S. Rothman, N. Iskander, D. Attwood, Y. Vladimirsky, K. McQuaid, J. Grendel, J. Kirz, H. Ade, I. McNulty, D. Kern, T. H. P. Chang and H. Rarback, "The interior of a whole and unmodified biological object—the zymogen granule—viewed with a high-resolution x-ray microscope," Biochimica et Biophysica Acta 991, 484-486, (1989).

    43. topbottom

    1988

  43. D. Shu, D. P. Siddons, H. Rarback and J. Kirz, "Two-dimensional laser interferometric encoder for the soft x-ray scanning microscope at the NSLS," Nuclear Instruments and Methods in Physics Research A 266, 313-317, (1988).

    44. topbottom

    1987

  44. M. Howells, C. Jacobsen, J. Kirz, R. Feder, K. McQuaid and S. Rothman, "X-ray holograms at improved resolution: a study of zymogen granules," Science 238, 514-517, (1987).

    45. topbottom

    1986

  45. M. R. Howells, M. A. Iarocci and J. Kirz, "Experiments in x-ray holographic microscopy using synchrotron radiation," Journal of the Optical Society of America A 3, 2171-2178, (1986).

    46. topbottom

    1985

  46. M. Howells, J. Kirz, D. Sayre and G. Schmahl, "Soft-x-ray microscopes," Physics Today 38, 22-32, (aug 1985).

    47. topbottom

    1976

  47. R. Feder, D. Sayre, E. Spiller, J. Topalian and J. Kirz, "Specimen replication for electron microscopy using x rays and x-ray resist," Journal of Applied Physics 47, 1192-1193, (1976). [PDF PDF]

Conference Proceedings / Other Publications

2007 | 2006 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1996 | 1995 | 1994 | 1993 | 1992 | 1991 | 1990 | 1989 | 1988 | 1986 | 1985 | 1984 | 1983 | 1980 | 1978
    2007

  1. M. D. de Jonge, S. Vogt, D. Legnini, I. McNulty, C. Rau, D. Paterson, B. Hornberger, C. Holzner and C. Jacobsen, "A method for phase reconstruction from measurements obtained using a configured detector with a scanning transmission X-ray microscope," Nuclear Instruments and Methods in Physics Research A 582, 218-220, (2007). [PDF PDF]

    2. topbottom

    2006

  2. G.J. Flynn, L.P. Keller, S. Wirick and C. Jacobsen, "Organic Analysis of Extraterrestrial Materials at the Sub-micron Scale," in S. Aoki, Y. Kagoshima and Y. Suzuki (eds.), X-ray Microscopy: Proceedings of the 8th International Conference, The Institute of Pure and Applied Physics (IPAP), IPAP Conference Series 7, Tokyo, Japan, 315-317, (2006). [PDF PDF]

  3. B. Hornberger, M. Feser, C. Jacobsen, S. Vogt, D. Legnini, D. Paterson, P. Rehak, G. De Geronimo and B. M. Palmer, "Combined Fluorescence and Phase Contrast Imaging at the Advanced Photon Source," in S. Aoki, Y. Kagoshima and Y. Suzuki (eds.), X-ray Microscopy: Proceedings of the 8th International Conference, The Institute of Pure and Applied Physics (IPAP), IPAP Conference Series 7, Tokyo, Japan, 396-398, (2006). [PDF PDF]

  4. E. Lima, D. Shapiro, P. Thibault, T. Beetz, V. Elser, M. Howells, X. Huang, C. Jacobsen, H. Miao, A.M. Neiman, A. Stewart and D. Sayre, "Diffraction Microscopy: Reconstruction of the Complex-Valued Image of a Yeast Cell," in S. Aoki, Y. Kagoshima and Y. Suzuki (eds.), X-ray Microscopy: Proceedings of the 8th International Conference, The Institute of Pure and Applied Physics (IPAP), IPAP Conference Series 7, Tokyo, Japan, 392-395, (2006). [PDF PDF]

    5. topbottom

    2004

  5. G. Flynn, L. Keller, C. Jacobsen and S. Wirick, "The Origin of Organic Matter in the Solar System: Evidence from the Interplanetary Dust Particles," in R.P. Norris and F.H. Stootman (eds.), Bioastronomy 2002: Life Among the Stars S-213, International Astronomical Union, 275-280, (2004).

  6. C. Jacobsen, S. Wang, W. Yun and S. Frigo, "Calculation of x-ray refraction from near-edge absorption data only," in R. Soufli and J. F. Seely (eds.), Optical Constants of Materials for UV to X-ray Wavelengths 5538, Proceedings of SPIE, 23-30, (2004). [PDF PDF]

    7. topbottom

    2003

  7. T. Beetz, C. Jacobsen, C.-C. Kao, J. Kirz, O. Mentes, C. Sanchez-Hanke, D. Sayre and D. Shapiro, "Development of a novel apparatus for experiments in soft x-ray diffraction imaging and diffraction tomography," Journal de Physique IV 104, 27-30, (2003). [PDF PDF]

  8. T. Beetz, C. Jacobsen and A. Stein, "Soft x-ray diffraction tomography: simulations and first experimental results," Journal de Physique IV 104, 31-34, (2003). [PDF PDF]

  9. M. Feser, C. Jacobsen, P. Rehak and G. DeGeronimo, "Scanning transmission x-ray microscopy with a segmented detector," Journal de Physique IV 104, 529-534, (2003). [PDF PDF]

  10. G.J. Flynn, L.P. Keller, S. Wirick, C. Jacobsen and S.R. Sutton, "Analysis of interplanetary dust particles by soft and hard X-ray microscopy," Journal de Physique IV 104, 367-372, (2003). [PDF PDF]

  11. G. Gleber, J. Thieme, J. Niemeyer and M. Feser, "Interaction of organic substances with iron studied by O1s spectroscopy—Development of an analysis program," Journal de Physique IV 104, 429-432, (2003). [PDF PDF]

  12. E. Lima, D. Shapiro, J. Kirz and D. Sayre, "Algorithmic image reconstruction using iterative phase retrievalschema," Journal de Physique IV 104, 631-634, (2003). [PDF PDF]

  13. B. Twining, S. Baines, N. Fisher, C. Jacobsen and J. Maser, "Quantification and localization of trace metals in natural plankton cells using a synchrotron X-ray fluorescence microprobe," Journal de Physique IV 104, 435-438, (2003). [PDF PDF]

  14. S. Vogt, J. Maser and C. Jacobsen, "Data analysis for X-ray fluorescence imaging," Journal de Physique IV 104, 617-622, (2003). [PDF PDF]

  15. T. Beetz, M. Feser, H. Fleckenstein, B. Hornberger, C. Jacobsen, J. Kirz, M. Lerotic, E. Lima, M. Lu, D. Sayre, D. Shapiro, A. Stein, D. Tennant and S. Wirick, "Soft X-ray Microscopy at the NSLS," Synchrotron Radiation News 16 (3), 11-15, (2003). [PDF PDF]

  16. C. Jacobsen, M. Feser, M. Lerotic, S. Vogt, J. Maser and T. Schäfer, "Cluster analysis of soft x-ray spectromicroscopy data," Journal de Physique IV 104, 623-626, (2003). [PDF PDF]

  17. C. Schmidt, J. Thieme, U. Neuhäusler, C. Jacobsen, B. Kaulich, M. Salomée and J. Susini, "Spectromicroscopy of soil colloids," Journal de Physique IV 104, 405-408, (2003). [PDF PDF]

    18. topbottom

    2002

  18. T. Beetz, M. Feser, C. Jacobsen, J. Kirz, D. Sayre, D. Shapiro, Y. Sheynkin, A. Stein and S. Wirick, "Soft x-ray microscopy at the NSLS," in Proceedings of the IEEE 2002 International Symposium on Biomedical Imaging: Macro to Nano, 137-140, (2002).

  19. C. Jacobsen, T. Beetz, M. Feser, A. Osanna, A. Stein and S. Wirick, "Spectromicroscopy of biological and environmental systems at Stony Brook: instrumentation and analysis," Surface Review and Letters 9 (1), 185-191, (2002).

    20. topbottom

    2001

  20. A. Osanna, C. Jacobsen, J. Kirz and Y. Sheynkin, "Cryogenic scanning transmission microscopy for biochemical analysis of the sperm," Fertility and Sterility 76 (3 (Supplement 1)), S265 (P459), (2001).

  21. A. Scheinost, R. Kretzschmar, I. Christl and C. Jacobsen, "Carbon group chemistry of humic and fulvic acid: A comparison of C-1s NEXAFS and 13C-NMR spectroscopies," in Humic Substances: Structures, Models and Functions, Royal Society of Chemistry, Cambridge, 37-45, (2001). [PDF PDF]

  22. M. Feser, C. Jacobsen, P. Rehak, G. DeGeronimo, P. Holl and L. Strüder, "Novel Integrating Solid State Detector with Segmentation for Scanning Transmission Soft X-ray Microscopy," in I. McNulty (ed.), X-ray micro- and nano-focusing: applications and techniques II 4499, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 117-125, (2001). [PDF PDF]

  23. M. Feser, T. Beetz, C. Jacobsen, J. Kirz, S. Wirick, A. Stein and T. Schäfer, "Scanning transmission soft x-ray microscopy at beamline X-1A at the NSLS - Advances in instrumentation and selected applications," in D. A. Tichenor and J. A. Folta (eds.), Soft X-Ray and EUV Imaging Systems II 4506, Society of Photo-Optical Instrumentation Engineers (SPIE), Proceedings of SPIE, Bellingham, Washington, 146-153, (2001). [PDF PDF]

    24. topbottom

    2000

  24. C. Jacobsen, "X-ray microscopy using FELs: possibilities and challenges," in G. S. Edwards and J. C. Sutherland (eds.), Biomedical Applications of Free-Electron Lasers 3925, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 16-25, (2000). [PDF PDF]

  25. K. Kaznacheyev, A. Osanna and B. Winn, "Sealed cell for in-water measurements," in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, (2000). [PDF PDF]

  26. J. Miao, P. Charalambous, J. Kirz and D. Sayre, "Extending the methodology of x-ray crystallography to allow x-ray microscopy without x-ray optics," in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, (2000). [PDF PDF]

  27. M. Feser, T. Beetz, M. Carlucci-Dayton and C. Jacobsen, "Instrumentation advances and detector development with the Stony Brook scanning transmission x-ray microscope," in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 367-372, (2000). [PDF PDF]

  28. M. R. Howells, B. Calef, C. J. Jacobsen, J. H. Spence and W. Yun, "A modern approach to x-ray holography," in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 586-592, (2000). [PDF PDF]

  29. U. Neuhäusler, S. Abend, S. Ziesmer, D. Schulze, D. Stott, K. Jones, H. Feng, C. Jacobsen and G. Lagaly, "Soft x-ray spectromicroscopy on hydrated colloidal and environmental science samples," in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 323-328, (2000).

  30. A. Osanna and C. Jacobsen, "Principle component analysis for soft x-ray spectromicroscopy," in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 350-357, (2000). [PDF PDF]

  31. F. Polack, D. Joyeux, M. Feser, D. Phalippou, M. Carlucci-Dayton, K. Kaznacheyev and C. Jacobsen, "Demonstration of phase contrast in scanning transmission x-ray microscopy: comparison of images obtained at NSLS X1-A with numerical simulations," in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 573-580, (2000). [PDF PDF]

  32. C. Schmidt, J. Thieme, U. Neuhäusler, U. Schulte-Ebbert, G. Abbt-Braun, C. Specht and C. Jacobsen, "Association of particles and structures in the presence of organicmatter," in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 313-318, (2000).

  33. D. Tennant, S. Spector, A. Stein and C. Jacobsen, "Electron beam lithography of Fresnel zone plates using a rectilinear machine and trilayer resists," in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 601-606, (2000). [PDF PDF]

  34. C. Jacobsen, S. Abend, T. Beetz, M. Carlucci-Dayton, M. Feser, K. Kaznacheyev, J. Kirz, J. Maser, U. Neuhäusler, A. Osanna, A. Stein, C. Vaa, Y. Wang, B. Winn and S. Wirick, "Recent developments in scanning microscopy at Stony Brook," in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 12-18, (2000). [PDF PDF]

    35. topbottom

    1999

  35. C. Jacobsen, "Soft X-ray Microscopy," Trends in Cell Biology 9 (2), 44-47, (Feb. 1999). [PDF PDF]

  36. C. Jacobsen and U. Neuhäusler, "Soft x-ray optics and spectromicroscopy: potential for soil science specimens," in D. G. Schulze, J. W. Stucki and P. M. Bertsch (eds.), Synchrotron Methods in Clay Science 8, Clay Minerals Society Workshop Lecture Series, Boulder, CO, 183-206, (1999).

    37. topbottom

    1998

  37. G.D. Cody, H. Ade, S. Wirick, G.D. Mitchell and A. Davis, "Determination of chemical-structural changes in vitrinite accompanying luminescence alteration using C-NEXAFS analysis," Organic Geochemistry 28, 441-456, (1998).

  38. G. J. Flynn, L. P. Keller, C. Jacobsen and S. Wirick, "Carbon and potassium mapping and carbon bonding state measurements on interplanetary dust," Meteoritics and Planetary Science 33 (4, supplement), A50-51, (1998).

  39. G. J. Flynn, L. P. Keller, C. Jacobsen and S. Wirick, "Carbon in Allan Hills 84001 carbonate and rim," Meteoritics and Planetary Science 33 (4, supplement), A50, (1998).

  40. G. J. Flynn, L. P. Keller, C. Jacobsen and S. Wirick, "Carbon mapping and carbon bonding state measurements on interplanetary dust particles," in Lunar and Planetary Science XXIX, Lunar and Planetary Institute, Houston, TX, USA, (1998), Abstract 1159.

  41. G. J. Flynn, L. P. Keller, M. A. Miller, C. Jacobsen and S. Wirick, "Organic compounds associated with carbonate globules and rims in the ALH84001 meteorite," in Lunar and Planetary Science XXIX, Lunar and Planetary Institute, Houston, TX, USA, (1998), Abstract 1156.

  42. R. Balhorn, R. E. Braun, B. Breed, J. T. Brown, D. Evenson, J. M. Heck, J. Kirz, I. McNulty, W. Meyer-Ilse and X. Zhang, "Applications of x-ray microscopy to the analysis of sperm chromatin," in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, II-29-46, (1998).

  43. J. Boese, A. Osanna, C. Jacobsen, J. Kirz, E. Tall and X. Zhang, "X-ray absorption near-edge structure of amino acids and peptides," in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, III-89-93, (1998).

  44. H. Zhang, G. R. Zhuang, H. Ade, C-H. Ko, B. Winn, J. Kirz, D. Leta, R. Polizotti, S. Cameron, S. Hulbert and E. Johnson, "Recent Progress with the Scanning Photoemission Microscope at the National Synchrotron Light Source," in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, II-143-156, (1998).

  45. S. Lindaas, B. Calef, K. Downing, M. Howells, C. Magowan, D. Pinkas and C. Jacobsen, "X-ray holography of fast-frozen hydrated biological samples," in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, II-75-86, (1998).

  46. J. Maser, C. Jacobsen, J. Kirz, A. Osanna, S. Spector, S. Wang and J. Warnking, "Development of a cryo scanning x-ray microscope at the NSLS," in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, I-35-44, (1998).

  47. S. J. Spector, C. J. Jacobsen and D. M. Tennant, "Zone plates for a scanning transmission x-ray microscope," in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, IV-13-19, (1998).

  48. C. Jacobsen, R. Medenwaldt and S. Williams, "A perspective on biological x-ray and electron microscopy," in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, II-93-102, (1998). [PDF PDF]

  49. M. Feser, M. Carlucci-Dayton, C. J. Jacobsen, J. Kirz, U. Neuhäusler, G. Smith and B. Yu, "Applications and instrumentation advances with the Stony Brook scanning transmission x-ray microscope," in I. McNulty (ed.), X-ray microfocusing: applications and techniques 3449, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 19-29, (1998). [PDF PDF]

    50. topbottom

    1996

  50. A. Osanna, C. Jacobsen, A. Kalinovsky, J. Kirz, J. Maser and S. Wang, "X-ray microscopy: preparations for studies of frozen hydrated specimens," Scanning Microscopy 10 (supplement), 349-358, (1996).

  51. S. Spector, C. Jacobsen and D. Tennant, "Fabrication of Fresnel zone plates for x-ray microscopy: diffractive optics for soft x rays," in Diffractive optics and micro-optics 5, Technical Digest Series, Optical Society of America, Washington, D.C., 328-331, (1996).

  52. B. Winn, X. Hao, C. Jacobsen, J. Kirz, J. Miao, S. Wirick, H. Ade, C. Buckley, M. Howells, S. Hulbert, I. McNulty and T. Oversluizen, "Considerations for a soft x-ray spectromicroscopy beamline," in L. E. Berman and J. Arthur (eds.), Optics for High-Brightness Synchrotron Radiation Beamlines II 2856, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 100-109, (1996).

  53. C. Jacobsen, "Soft-x-ray microscopy: imaging of biological systems," in E. Burattini and A. Balerna (eds.), Biomedical Applications of Synchrotron Radiation {CXXVIII} {Corso}, IOS Press, Società Italiana di Fisica, Amsterdam, 91-109, (1996).

    54. topbottom

    1995

  54. C.-H. Ko, J. Kirz, H. Ade, S. Hulbert, E. Johnson and E. Anderson, "Applications of the X1A scanning photoemission spectromicroscope for element identification on material surfaces," in L. J. Terminello, N. D. Shinn, G. E. Ice, K. L. D'Amico and D. L. Perry (eds.), Applications of Synchrotron Radiation Techniques to Materials Science II 375, Materials Research Society Symposium Proceedings, Boston, MA, 303-305, (1995).

  55. C.-H. Ko, J. Kirz, K. Maier, B. Winn, H. Ade, S. Hulbert, E. Johnson and E. Anderson, "Chemical state mapping on materials surfaces with the X1A second generation scanning photoemission microscope (X1A SPEM-II)," in W. Yun (ed.), X-ray microbeam technology and applications 2516, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 150-159, (1995).

  56. J. M. Maser, H. N. Chapman, C. J. Jacobsen, A. Kalinovsky, J. Kirz, A. Osanna, S. Spector, S. Wang, B. Winn, S. Wirick and X. Zhang, "Scanning transmission x-ray microscope at the NSLS: from XANES to cryo," in W. Yun (ed.), X-ray microbeam technology and applications 2516, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 78-89, (1995).

    57. topbottom

    1994

  57. J. Kirz, H. Ade, C. Jacobsen, C. H. Ko, S. Lindaas, S. Williams and X. Zhang, "Soft X-ray Microscopy—Physical Basis and Recent Developments," in Proceedings of the Fifth Asia-Pacific Physics Conference 1, World Scientific, Singapore and River Edge, New Jersey, 200-215, (1994).

  58. J. Kirz, C. Jacobsen, S. Lindaas, S. Williams, X. Zhang, E. Anderson and M. Howells, "Soft X-Ray Microscopy at the National Synchrotron Light Source," in B. Chance, D. Deisenhober, S. Ebashi, D. T. Goodhead, J. R. Helliwell, H. E. Huxley, T. Iizuka, J. Kirz, T. Mitsui, E. Rubenstein, N. Sakabe, T. Sasaki, G. Schmahl, H. Sturhmann, K. Wüthrich and G. Zaccai (eds.), Synchrotron Radiation in the Biociences, Clarendon Press, Oxford, 563-571, (1994).

  59. H. Chapman, S. Williams and C. Jacobsen, "Imaging of 30 nm gold spheres by dark-field scanning transmission x-ray microscopy," in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 52-53, (1994).

  60. C. Jacobsen, J. Fu, Y. Wang and S. Williams, "Scanning luminescence x-ray microscopy: progress towards selective staining using microspheres," in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 74-75, (1994).

  61. S. Williams, C. Jacobsen, J. Kirz, S. S. Lamm, J. van't Hof and X. Zhang, "Metaphase chromosome DNA mass fraction is independent of species," in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 46-47, (1994).

  62. Y. Wang and C. Jacobsen, "Modelling of dissolution and resolution in contact x-ray microscopy," in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 62-63, (1994).

  63. X. Zhang, R. Balhorn, C. Jacobsen, J. Kirz and S. Williams, "Mapping DNA and protein in biological samples using the scanning transmission x-ray microscope," in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 50-51, (1994).

  64. S. Lindaas, C. Jacobsen, A. Kalinovsky and M. Howells, "X-ray Gabor holography: recent progress," in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 72-73, (1994).

  65. M. R. Howells, C. J. Jacobsen and S. Lindaas, "X-ray holographic microscopy using the atomic-force microscope," in V. V. Aristov and A. I. Erko (eds.), X-ray Microscopy IV, Bogorodskii Pechatnik, Proceedings of the 4th International Conference, Chernogolovka, Russia, September 20-24, 1993, Chernogolovka, Russia, 413-427, (1994).

  66. C. Jacobsen, E. Anderson, H. Chapman, J. Kirz, S. Lindaas, M. Rivers, S. Wang, S. Williams, S. Wirick and X. Zhang, "The X-1A Scanning Transmission X-ray Microscope: Optics and Instrumentation," in V. V. Aristov and A. I. Erko (eds.), X-ray Microscopy IV, Bogorodskii Pechatnik, Proceedings of the 4th International Conference, Chernogolovka, Russia, September 20-24, 1993, Chernogolovka, Russia, 304-321, (1994).

  67. J. Kirz, H. Ade, R. E. Botto, G. D. Cody, J. Fu<