SB X-ray Home

Research
Introduction
SRN Article
Publications
X-ray Microscopy Links

People
Group
Alumni
Open Positions

User Info
New Users
Beamtime Schedule
Beamline Safety
Manuals
NSLS Status

Data and Analysis
Data Download
Analysis Software
Reference Spectra
Thumbnails

Our Setting
Stony Brook University
Physics Department
Brookhaven Laboratory
NSLS
CEMS

Interna
Computer Info
Network Info
Using our Printers
Setting up CVS
SSH Tricks

Email Contact

Analysis Software



The following ".sav" files can be run using the IDL Virtual Machine which can be downloaded from the web site of Research Systems Inc., or in standard IDL. When you click on the files, save them to your local IDL directory. On Windows, this is typically something like c:\rsi\idl61\lib\idl_local\, whereas on Unix it is typically /usr/local/rsi/idl/lib/idl_local/.

If you wish to be notified about updates to our spectromicroscopy analysis programs, you can subscribe to the spectro mailing list.

To gain CVS access to the diffraction microscopy code archive, send mail to Chris Jacobsen. For more information see the manuals and subscribe to the diffmic mailing list.

DescriptionProgram file DocumentationLast updated
sm_gui: Graphical User Interface for STXM 5, can run in display-only mode without microcope control features to view and process data files. Can display STXM 4 data files with some image processing, analysis and export features. .zip See STXM 5 documentation:
HTML,  PDF
Last modified: January 19, 2007
tweak: read in STXM images, do some simple image processing, and save results to various files .sav  PDF Version 1.3.1, Dec. 7, 2005
spectra_gui: read in STXM spectra(I or I0), and plot raw spectra plus optical density .sav  Version 1.0, Dec. 7, 2005
stack_analyze: read in a series of STXM files, and look at the spectra of regions of these files .sav HTML
 PDF
Version 2.6.1, Dec. 9, 2005
pca_gui: cluster analysis. Requires that you have first used stack_analyze to save the data as a ".stk" file, and to have saved an I0 spectrum as a ".csv" or ".xas" file. .sav HTML
 PDF
Version 1.1.1, Dec. 9, 2005

In addition, the following zip files contain IDL procedure files that we make available. You would typically unzip them into /usr/local/rsi/idl/lib/idl_local/filename on unix or c:\rsi\idl61\lib\idl_local\filename on Windows.

DescriptionSource code fileDocumentation Last updated
IDL routines for dealing with the Henke-Gullikson data from the Center for X-ray Optics, Lawrence Berkeley Lab henke.zip  PDF  
IDL routines for dealing with the NIST XCOM data on x-ray and gamma cross sections xcom.zip   
The X-1 library of IDL routines. This library includes read_dm3.pro for reading Gatan Digital Micrograph version 3 or .dm3 files. idl_x1.zip   Nov. 24, 2006